Ontology Summit 2023¶

This course unit only covers the OBO part of the Ontology Summit 2023, for a full overview see https://ontologforum.org/index.php/OntologySummit2023.

Goal¶

Giving a broad overview of the key OBO methodologies and tools to the general ontology community.

Date	Lesson	Tutors	Notes
2023/01/25	Introduction to COB	Chris Mungall	Slides
2023/02/01	Introduction to ROBOT and OAK	James Overton and Chris Mungall	ROBOT Slides OAK Slides
2023/02/08	Managing the Ontology Life Cycle with the Ontology Development Kit	Anita Caron, Damien Goutte-Gattat, Philip Stroemert, Nicolas Matentzoglu	09:00am: Introduction and use cases and workflows 09:15am: Overview of the ODK toolbox 09:30am: Setting up your own repo 10:00am: Advanced customisation, adding a custom SPARQL check
2023/02/15	Using Dashboards to monitor OBO ontologies	Charlie Hoyt, Nicolas Matentzoglu, Anita Caron	09:05am: The problem of encouraging and monitoring ontology standardisation (@matentzn, @cthoyt) 09:15am: Overview of the OBO Dashboard: Standardising metadata across OBO Foundry ontologies (@matentzn) 09:30am: Other dashboards for standardising metadata (oquat, versions) (@cthoyt) 09:37am: Dashboards for measuring social workflows (OBO health) (@cthoyt) 09:45am: Using the OBO Dashboard Kit to create your own, customised Dashboard (@anitacaron)
2023/02/02	Using OBO Ontologies: Ubergraph and other applications	Jim Balhoff	09:00am: Ubergraph: integrating OBO ontologies into a unified semantic graph 09:35am: SSSOM - Open, FAIR and standardised mappings for ontologies, controlled vocabularies and database entities